Tutorial 17. Interactive -- 2D harmonic potential

Learning objectives

  • Learn to plot 3D graph to visualize potentials in multidimensional space
  • Play around with the generalized force constants of 2D harmonic potential to understand how the diagonal and off-diagonal elements influence the shape of the potential
Read More

Tutorial 2. Visualize molecular structures

Learning objectives

  • Learn to visualize molecular structures for molecular simulation.
  • Topics:
    1. Common software for molecular structure visualization.
    2. Visualize a static molecule structure.
    3. Visualize a trajectory (a moving molecule).
Read More